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Spatial Transcriptomics Inc oligonucleotide array surfaces
Oligonucleotide Array Surfaces, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/oligonucleotide+array/array+oligonucleotide+surfaces/pmc12579210-0-14-0
Average 86 stars, based on 1 article reviews
oligonucleotide array surfaces - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens.
Article Snippet: However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [3], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [6] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [4, 6].

Article Title: Tissular chromatin-state cartography based on double-barcoded DNA arrays that capture unloaded PA-Tn5 transposase
Article Snippet: Like in our previous study describing the use of double-barcoded DNA arrays for spatial transcriptomics , we have used BCr oligonucleotides presenting an amino C6 linker at the 5′ extremity, followed by four G or C nucleotides (S), a T7 promoter sequence (GACTCGTAATACGACTCACTATAGGG), a unique molecular identifier (UMI; WSNNWSNNV), a molecular barcode (8 nt) associated to the printed row in the DNA array, and a 30 nt adapter sequence with a GC-content of 40% (here named as Gibson sequence “ACATTGAAGAACCTG-TAGATAACTCGCTGT”).

Spatial Transcriptomics:

Article Title: DNA microarray chips: Fabrication and cutting-edge applications
Article Snippet: For decades, DNA chips, also known as DNA microarrays, have been extensively utilized for high-throughput gene expression analysis and single nucleotide polymorphism (SNP) genotyping.. However, its utility extends far beyond these applications.. Its use as a chip for Next Generation Sequencing (NGS) has brought about a revolutionary impact on many aspects of life science research.

Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens
Article Snippet: Thus methods such as fluorescent in-situ hybridisation (FISH) [ ], laser-capture microdissection (LCM) [ – ] or the SPATiAL TRANSCRIPTOMICS [ , ] workflow are better suited to understand spatial transcription changes. .. However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [ ], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [ ] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [ , ]. ..

Article Title: Multimodal Mass Spectrometry Imaging in Atlas Building: A Review.
Article Snippet: .. Spatial transcriptomics is a rapidly evolving field involving the measurement and localization of gene expression that can be used to understand the mechanisms behind disease and disorder.106 Current commercial spatial transcriptomics approaches utilize DNA microarrays to capture and sequence RNA transcripts107,108 or in situ hybridization109−111 to detect and analyze gene expression. ..

Article Title: Hidden network preserved in Slide-tags data allows reference-free spatial reconstruction
Article Snippet: .. Spatial transcriptomics technologies aim to spatially map gene expression in tissues and typically use oligonucleotide array surfaces that have undergone spatial indexing. ..

Fluorescence In Situ Hybridization:

Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens
Article Snippet: Thus methods such as fluorescent in-situ hybridisation (FISH) [ ], laser-capture microdissection (LCM) [ – ] or the SPATiAL TRANSCRIPTOMICS [ , ] workflow are better suited to understand spatial transcription changes. .. However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [ ], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [ ] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [ , ]. ..

Imaging:

Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens
Article Snippet: Thus methods such as fluorescent in-situ hybridisation (FISH) [ ], laser-capture microdissection (LCM) [ – ] or the SPATiAL TRANSCRIPTOMICS [ , ] workflow are better suited to understand spatial transcription changes. .. However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [ ], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [ ] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [ , ]. ..

Multiplexing:

Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens
Article Snippet: Thus methods such as fluorescent in-situ hybridisation (FISH) [ ], laser-capture microdissection (LCM) [ – ] or the SPATiAL TRANSCRIPTOMICS [ , ] workflow are better suited to understand spatial transcription changes. .. However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [ ], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [ ] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [ , ]. ..

Laser Capture Microdissection:

Article Title: Spatially resolved transcriptomics reveals plant host responses to pathogens
Article Snippet: Thus methods such as fluorescent in-situ hybridisation (FISH) [ ], laser-capture microdissection (LCM) [ – ] or the SPATiAL TRANSCRIPTOMICS [ , ] workflow are better suited to understand spatial transcription changes. .. However, all three methods need specific tissue preparations (e.g. cryo-sectioning, permeabilization or fixation) and specialised protocols to assess transcriptome levels: FISH methods require imaging of transcripts and are restricted to multiplexing a few fluorescent anti-sense probes at a time [ ], LCM requires specialised equipment and training for precise, laborious excision of specific tissue elements [ ] and the SPATiAL TRANSCRIPTOMICS protocol requires preparation of thinly sectioned, permeabilised samples and custom made DNA arrays [ , ]. ..

RNA Sequencing:

Article Title: Old school, new rules: floral meristem development revealed by 3D gene expression atlases and high-resolution transcription factor–chromatin dynamics
Article Snippet: Spatial transcriptomics methods detect the positional context of transcriptional activity in intact plants at a higher resolution than previously available approaches, either for regions or single cells. .. Spatial transcriptomics was initially developed for mammalian systems, using positional barcodes on an oligonucleotide array for RNA-seq on fixed mouse ( Mus musculus ) brain and human ( Homo sapiens ) breast cancer tissue sections ( ; ). ..

Gene Expression:

Article Title: Multimodal Mass Spectrometry Imaging in Atlas Building: A Review.
Article Snippet: .. Spatial transcriptomics is a rapidly evolving field involving the measurement and localization of gene expression that can be used to understand the mechanisms behind disease and disorder.106 Current commercial spatial transcriptomics approaches utilize DNA microarrays to capture and sequence RNA transcripts107,108 or in situ hybridization109−111 to detect and analyze gene expression. ..

Article Title: Hidden network preserved in Slide-tags data allows reference-free spatial reconstruction
Article Snippet: .. Spatial transcriptomics technologies aim to spatially map gene expression in tissues and typically use oligonucleotide array surfaces that have undergone spatial indexing. ..

Sequencing:

Article Title: Multimodal Mass Spectrometry Imaging in Atlas Building: A Review.
Article Snippet: .. Spatial transcriptomics is a rapidly evolving field involving the measurement and localization of gene expression that can be used to understand the mechanisms behind disease and disorder.106 Current commercial spatial transcriptomics approaches utilize DNA microarrays to capture and sequence RNA transcripts107,108 or in situ hybridization109−111 to detect and analyze gene expression. ..

In Situ:

Article Title: Multimodal Mass Spectrometry Imaging in Atlas Building: A Review.
Article Snippet: .. Spatial transcriptomics is a rapidly evolving field involving the measurement and localization of gene expression that can be used to understand the mechanisms behind disease and disorder.106 Current commercial spatial transcriptomics approaches utilize DNA microarrays to capture and sequence RNA transcripts107,108 or in situ hybridization109−111 to detect and analyze gene expression. ..



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